rs13473235 SNP Detail

Summary

• ID
  rs13473235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84393729 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCTTG TCTCCATGGC AATCTCTCAC
  Y
  AGTCTGGCAT TGCCTCATTC AGATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46209314	mCV23002214	ABI	CRAMUS_MOUSE	r	SNP		A	A					G		A
ss51971827	NES14985927	PERLEGEN	MM_PANEL2	r	SNP	A		A	A	A	A	A		G	A	G	A		G	A	A	G		A
ss145359601	ENSMUSSNP2920494	ENSEMBL	ENSEMBL_Sanger	r	SNP										A
ss322745398	CHEV_8_86190999	CHEVERUD	SCREENING_POP	r	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13473235					SNP	T	T	T	T	T	T	T	C	C	T	C	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971827	NES14985927	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84393729 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	599 bp proximal
Pkn1	protein kinase N1	within coordinates
Ptger1	prostaglandin E receptor 1 (subtype EP1)	within coordinates
Rr666278	regulatory region 666278	1913 bp distal
Rr666279	regulatory region 666279	412 bp distal
Rr666280	regulatory region 666280	within coordinates
Rr666281	regulatory region 666281	753 bp proximal
Rr666282	regulatory region 666282	1007 bp proximal
Rr666283	regulatory region 666283	1781 bp proximal
Tssr78279	transcription start site region 78279	441 bp downstream
Tssr78280	transcription start site region 78280	383 bp downstream
Tssr78281	transcription start site region 78281	218 bp downstream