rs13473236 SNP Detail

Summary

• ID
  rs13473236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84393751 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAATC CCATCTCTGT TGCCCTCTCT
  Y
  GTCTCCATGG CAATCTCTCA CCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46238734	mCV23002215	ABI	CRAMUS_MOUSE	r	SNP		G	G					A		G
ss51971826	NES14985930	PERLEGEN	MM_PANEL2	r	SNP	G		G	G	G	G	G		A	G	A	G		A	G	G	A		G
ss145359606	ENSMUSSNP133516	ENSEMBL	ENSEMBL_Sanger	r	SNP			G							G
ss322745399	CHEV_8_86191021	CHEVERUD	SCREENING_POP	r	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13473236					SNP	C	C	C	C	C	C	C	T	T	C	T	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971826	NES14985930	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84393751 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20651	CpG island 20651			577 bp proximal
Pkn1	protein kinase N1			mRNA-UTR
				Noncoding-Transcript-Variant
Ptger1	prostaglandin E receptor 1 (subtype EP1)			Intron
				mRNA-UTR
Rr666278	regulatory region 666278			1935 bp distal
Rr666279	regulatory region 666279			434 bp distal
Rr666280	regulatory region 666280			within coordinates
Rr666281	regulatory region 666281			731 bp proximal
Rr666282	regulatory region 666282			985 bp proximal
Rr666283	regulatory region 666283			1759 bp proximal
Tssr78279	transcription start site region 78279			463 bp downstream
Tssr78280	transcription start site region 78280			405 bp downstream
Tssr78281	transcription start site region 78281			240 bp downstream