rs13473275 SNP Detail

Summary

• ID
  rs13473275
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:62495884 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCCAG GTAAGCAAAC AAGATGGCGT
  S
  TTTGCATGGC ACTGCAGCCA AGAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37187307	NES08410403	PERLEGEN	MM_PANEL2	r	SNP	G	G	C	G	G	G	G		G	G	G		G
ss323704026	CHEV_11_62418560	CHEVERUD	SCREENING_POP	r	SNP								C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13473275					SNP	C	C	G	C	C	C	C	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37187307	NES08410403	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62495884 () rs orientation: reverse

Symbol	Name	Function Class
2410006H16Rik	RIKEN cDNA 2410006H16 gene	252 bp downstream
Cpgi3027	CpG island 3027	1555 bp distal
Lrrc75a	leucine rich repeat containing 75A	mRNA-UTR
Lrrc75aos2	leucine rich repeat containing 75A, opposite strand 2	672 bp upstream
Rr448875	regulatory region 448875	974 bp distal
Rr448876	regulatory region 448876	1192 bp distal
Rr448877	regulatory region 448877	within coordinates
Rr448878	regulatory region 448878	182 bp proximal
Rr448879	regulatory region 448879	1534 bp proximal
Snord49a	small nucleolar RNA, C/D box 49A	1537 bp downstream
Snord49b	small nucleolar RNA, C/D box 49B	1910 bp downstream
Snord65	small nucleolar RNA, C/D box 65	472 bp downstream
Tssr102050	transcription start site region 102050	1980 bp downstream
Tssr102051	transcription start site region 102051	1892 bp downstream
Tssr102052	transcription start site region 102052	1866 bp downstream
Tssr102053	transcription start site region 102053	1601 bp downstream
Tssr102054	transcription start site region 102054	670 bp upstream