rs13473285 SNP Detail

Summary

• ID
  rs13473285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86586662 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             TCCAGCTTCT GGATGATGGG CAGGGCACTT GTCATGGCCG CAGAGGTCAC
  Y
  GTCTTCACGC CCTTCTCGGC CATCTCACAC ACGGATCTCA AATACGGGTA           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38208262	NES09593013	PERLEGEN	MM_PANEL2	r	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13473285					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38208262	NES09593013	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86586662 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	1484 bp proximal
Plin2	perilipin 2	within coordinates
Rr594783	regulatory region 594783	300 bp proximal
Rr594784	regulatory region 594784	639 bp proximal
Rr594785	regulatory region 594785	1625 bp proximal
Tssr1221	transcription start site region 1221	1824 bp upstream
Tssr37738	transcription start site region 37738	1768 bp upstream
Tssr42335	transcription start site region 42335	62 bp downstream
Tssr42336	transcription start site region 42336	277 bp downstream
Tssr42337	transcription start site region 42337	1025 bp downstream
Tssr42338	transcription start site region 42338	1047 bp downstream
Tssr42339	transcription start site region 42339	1067 bp downstream
Tssr42340	transcription start site region 42340	1561 bp downstream
Tssr42341	transcription start site region 42341	1605 bp downstream