rs13473394 SNP Detail

Summary

• ID
  rs13473394
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8728993 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATCAG ATGCGCAGCT TTACTGGAGA
  A
  CACTGGCTCT CTCTCTGCCT CTCAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320647889	CHEV_3_8663933	CHEVERUD	SCREENING_POP	r	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs13473394					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8728993 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12961	CpG island 12961	589 bp proximal
Hey1	hairy/enhancer-of-split related with YRPW motif 1	mRNA-UTR
Rr573304	regulatory region 573304	1045 bp distal
Rr573305	regulatory region 573305	755 bp proximal
Tssr32550	transcription start site region 32550	1849 bp downstream