rs13473395 SNP Detail

Summary

• ID
  rs13473395
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8729100 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAACA CGATTTTGTT ACTACTTTGA
  Y
  GGACCGAGGT GTTGTATAAG TGGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45480606	mCV24641293	ABI	CRAMUS_MOUSE	r	SNP	A	A	A	A	G
ss134569709	ENSMUSSNP937718	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	A		G
ss320647890	CHEV_3_8664040	CHEVERUD	SCREENING_POP	r	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13473395					SNP	T	T	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8729100 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12961	CpG island 12961	482 bp proximal
Hey1	hairy/enhancer-of-split related with YRPW motif 1	mRNA-UTR
Rr573304	regulatory region 573304	1152 bp distal
Rr573305	regulatory region 573305	648 bp proximal
Tssr32550	transcription start site region 32550	1742 bp downstream