rs13473396 SNP Detail

Summary

• ID
  rs13473396
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8731622 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CATCT TACAGAAACT TGAGTTCGGC
  K
  CTGTGTTCCA TGTCCCCAAC GACAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320647893	CHEV_3_8666562	CHEVERUD	SCREENING_POP	r	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs13473396					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8731622 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12961	CpG island 12961	1441 bp distal
Cpgi12962	CpG island 12962	within coordinates
Gm64520	predicted gene, 64520	within coordinates
Hey1	hairy/enhancer-of-split related with YRPW motif 1	Coding-Synonymous
Rr573305	regulatory region 573305	1853 bp distal
Rr573306	regulatory region 573306	21 bp distal
Rr573307	regulatory region 573307	582 bp proximal
Rr573308	regulatory region 573308	684 bp proximal
Tssr32550	transcription start site region 32550	763 bp upstream
Tssr32551	transcription start site region 32551	271 bp downstream
Tssr32552	transcription start site region 32552	401 bp downstream
Tssr32553	transcription start site region 32553	435 bp downstream
Tssr32554	transcription start site region 32554	471 bp downstream
Tssr32555	transcription start site region 32555	487 bp downstream
Tssr32556	transcription start site region 32556	715 bp downstream