rs13473397 SNP Detail

Summary

• ID
  rs13473397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8729498 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCTTA AAATCCCAGG TGTGTTGGGA
  Y
  GGTTGTCAAC ACCACCCTAA AGTCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45523123	mCV24641294	ABI	CRAMUS_MOUSE	r	SNP	G	G	A
ss134569712	ENSMUSSNP3668144	ENSEMBL	ENSEMBL_Sanger	r	SNP	G		A
ss320647891	CHEV_3_8664438	CHEVERUD	SCREENING_POP	r	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13473397					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8729498 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12961	CpG island 12961	84 bp proximal
Hey1	hairy/enhancer-of-split related with YRPW motif 1	mRNA-UTR
Rr573304	regulatory region 573304	1550 bp distal
Rr573305	regulatory region 573305	250 bp proximal
Rr573306	regulatory region 573306	1603 bp proximal
Tssr32550	transcription start site region 32550	1344 bp downstream