rs13473425 SNP Detail

Summary

• ID
  rs13473425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81199623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CTTCCCAACG CCACTCCACT CCTTATTACA GGGGACCCGC GAGACCGGCC
  Y
  TGACCTCTGG CTCCCCAGGG CGACGTTATG AAGGACCAGG CAGACACCCT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52387635	NES15272380	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13473425					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52387635	NES15272380	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81199623 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1975	CpG island 1975	42 bp proximal
Mfsd12	major facilitator superfamily domain containing 12	within coordinates
Tektip1	tektin bundle interacting protein 1	235 bp downstream
Tssr94743	transcription start site region 94743	237 bp upstream
Tssr94744	transcription start site region 94744	496 bp upstream
Tssr94745	transcription start site region 94745	531 bp upstream
Tssr94746	transcription start site region 94746	608 bp upstream
Tssr94747	transcription start site region 94747	626 bp upstream
Tssr98595	transcription start site region 98595	1057 bp downstream
Tssr98596	transcription start site region 98596	1995 bp downstream