rs13473550 SNP Detail

Summary

• ID
  rs13473550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135673028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG AAGAATCTGG ACAGCACCAC
  Y
  GTGGCAGTGC ATGGAGAAGA GATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45042231	mCV23240580	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss145544726	ENSMUSSNP5842557	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss319992920	CHEV_1_137641867	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13473550					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135673028 () rs orientation: forward

Symbol	Name	Function Class
Csrp1	cysteine and glycine-rich protein 1	within coordinates
Rr419261	regulatory region 419261	1004 bp distal
Rr419262	regulatory region 419262	933 bp proximal
Tssr222	transcription start site region 222	1480 bp upstream