rs13473558 SNP Detail

Summary

• ID
  rs13473558
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93322334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CAGCTTTGCC ATTCATAAGT GTCTGGAGTT GTCAGGTTCC AAAAGTCTTA
  K
  TTCTATTGAC AGGACATTTA TTATGGAGTC ATTAAGTGAA TCATGACCTA           
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46607534	NES10424017	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13473558					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46607534	NES10424017	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93322334 () rs orientation: forward

Symbol	Name	Function Class
Rr114907	regulatory region 114907	667 bp proximal
Rr130579	regulatory region 130579	1334 bp distal
Septin11	septin 11	within coordinates
Tssr47367	transcription start site region 47367	1991 bp downstream
Tssr47368	transcription start site region 47368	1697 bp downstream
Tssr47369	transcription start site region 47369	1660 bp downstream
Tssr47370	transcription start site region 47370	1525 bp downstream
Tssr47371	transcription start site region 47371	1456 bp downstream
Tssr47372	transcription start site region 47372	1428 bp downstream
Tssr47373	transcription start site region 47373	1371 bp downstream
Tssr47374	transcription start site region 47374	842 bp downstream
Tssr47375	transcription start site region 47375	794 bp downstream
Tssr47376	transcription start site region 47376	877 bp upstream