rs13473594 SNP Detail

Summary

• ID
  rs13473594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120548831 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTTTC TTGTGTCCAG AAGCTGGACT
  R
  TCACCCTTAT CCCCAAATAT TGACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37647014	NES09020509	PERLEGEN	MM_PANEL2	r	SNP	C		C	C	C	C		C	C	C		T	C	C	T		C
ss45236450	mCV25281073	ABI	CRAMUS_MOUSE	r	SNP	C	C	C				T	C
ss147367257	ENSMUSSNP6754670	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	C					C
ss320479592	CHEV_2_120544086	CHEVERUD	SCREENING_POP	r	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13473594					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37647014	NES09020509	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120548831 () rs orientation: reverse

Symbol	Name	Function Class
Cdan1	codanin 1	within coordinates
Stard9	StAR related lipid transfer domain containing 9	within coordinates