rs13474172 SNP Detail

Summary

• ID
  rs13474172
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172026817 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                         AGTTGTGGT TCAAGAATAC CAGTTTTGAC AGGGCAGAAG
  TTGACCTCTA TAGCCTAGCT CTGACACAAG CTGCCTTCCT CCAGACAACC TCTCCTACAT
  W
  GAGCACATCT TTGAGATATC TCGCCGTCCT GACCTCCTCA CTATGGTGGT TGACTACAGA
  ACCCGTGTGC TGAAGATCTC TGAGGAGGAG GAGCTGGACA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45149188	mCV23615038	ABI	CRAMUS_MOUSE	r	SNP	T	T					A
ss49752998	NES13041139	PERLEGEN	MM_PANEL2	r	SNP	T	T	T	T	A	T		A	T	A	T		A	T	T	T		A
ss120007290	PARCsnp_1.17723	PARC_SEQ	INBRED	r	SNP							A		T
ss120010188	PARCsnp_1.07361	PARC_SEQ	INBRED	r	SNP							A		T
ss146183714	ENSMUSSNP2706861	ENSEMBL	ENSEMBL_Sanger	r	SNP		T
ss320123171	CHEV_1_174129381	CHEVERUD	SCREENING_POP	r	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13474172					SNP	A	A	A	A	T	A	T	T	A	T	A	A	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752998	NES13041139	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172026817 () rs orientation: reverse

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	1183 bp proximal
Tssr10176	transcription start site region 10176	1014 bp downstream
Tssr10177	transcription start site region 10177	625 bp downstream
Tssr10178	transcription start site region 10178	579 bp downstream
Tssr15149	transcription start site region 15149	1486 bp upstream
Tssr15150	transcription start site region 15150	1376 bp upstream
Tssr15151	transcription start site region 15151	1339 bp upstream
Tssr15152	transcription start site region 15152	1189 bp upstream
Tssr15153	transcription start site region 15153	1171 bp upstream
Tssr15154	transcription start site region 15154	1048 bp upstream
Tssr15155	transcription start site region 15155	907 bp upstream
Tssr15156	transcription start site region 15156	734 bp upstream
Tssr15157	transcription start site region 15157	691 bp upstream
Tssr15158	transcription start site region 15158	82 bp upstream
Tssr15159	transcription start site region 15159	43 bp upstream
Tssr15160	transcription start site region 15160	1 bp upstream
Tssr15161	transcription start site region 15161	1234 bp downstream
Tssr15162	transcription start site region 15162	1291 bp downstream
Tssr15163	transcription start site region 15163	1307 bp downstream