rs13474321 SNP Detail

Summary

• ID
  rs13474321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95037506 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCAC CCATGAGCCC CACCAAACGA
  Y
  GAGTCCTGAA CCATTACCTT ACCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45454545	mCV24559807	ABI	CRAMUS_MOUSE	r	SNP	G	A	G
ss135510062	ENSMUSSNP1462456	ENSEMBL	ENSEMBL_Sanger	r	SNP	G		G
ss320841133	CHEV_3_94934117	CHEVERUD	SCREENING_POP	r	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13474321					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95037506 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr580821	regulatory region 580821			470 bp distal
Scnm1	sodium channel modifier 1			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
Tmod4	tropomodulin 4			986 bp downstream
Tssr30498	transcription start site region 30498			1240 bp upstream