rs13474325 SNP Detail

Summary

• ID
  rs13474325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24792026 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CGATT CACCTGAGCT TTGATGTCGA
  Y
  GGGCTGGACC CAGCATTCAC CCCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss61262547	NES16880317	PERLEGEN	MM_PANEL2	r	SNP	G		A	A	A	G	G	G	A	A		G	A	G	G
ss146998895	ENSMUSSNP7005291	ENSEMBL	ENSEMBL_Sanger	r	SNP		G						G
ss323275267	CHEV_10_24635934	CHEVERUD	SCREENING_POP	r	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs13474325					SNP	C	C	T	T	T	C	C	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262547	NES16880317	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24792026 () rs orientation: reverse

Symbol	Name	Function Class
Arg1	arginase, liver	Coding-Synonymous
Tssr92746	transcription start site region 92746	491 bp downstream
Tssr92747	transcription start site region 92747	401 bp downstream
Tssr97085	transcription start site region 97085	635 bp upstream
Tssr97086	transcription start site region 97086	573 bp upstream
Tssr97087	transcription start site region 97087	547 bp upstream
Tssr97088	transcription start site region 97088	487 bp upstream
Tssr97089	transcription start site region 97089	472 bp upstream
Tssr97090	transcription start site region 97090	441 bp upstream
Tssr97091	transcription start site region 97091	46 bp upstream
Tssr97092	transcription start site region 97092	27 bp upstream
Tssr97093	transcription start site region 97093	within coordinates
Tssr97094	transcription start site region 97094	3 bp downstream
Tssr97095	transcription start site region 97095	17 bp downstream
Tssr97096	transcription start site region 97096	282 bp downstream
Tssr97097	transcription start site region 97097	556 bp downstream
Tssr97098	transcription start site region 97098	704 bp downstream
Tssr97099	transcription start site region 97099	1819 bp downstream
Tssr97100	transcription start site region 97100	1857 bp downstream