rs13474326 SNP Detail

Summary

• ID
  rs13474326
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66212309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GGGTCACCTG GCCTTCTTGT CATCTCCCTG AAGGATGCTC TGGAGGACAC
  Y
  AGGGATTCTG AAATGAAGCT GAAGGCATTC CCGGAAGTGT GTAACGAGAC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49200008	NES12498021	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13474326					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49200008	NES12498021	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66212309 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Tssr126263	transcription start site region 126263	1533 bp downstream
Tssr126264	transcription start site region 126264	1492 bp downstream
Tssr126265	transcription start site region 126265	1464 bp downstream
Tssr126266	transcription start site region 126266	1425 bp downstream
Tssr126267	transcription start site region 126267	598 bp downstream
Tssr126268	transcription start site region 126268	within coordinates
Tssr126269	transcription start site region 126269	63 bp upstream
Tssr126270	transcription start site region 126270	722 bp upstream
Tssr126271	transcription start site region 126271	740 bp upstream
Tssr126272	transcription start site region 126272	765 bp upstream
Tssr126273	transcription start site region 126273	792 bp upstream
Tssr126274	transcription start site region 126274	836 bp upstream
Tssr126275	transcription start site region 126275	845 bp upstream
Tssr126276	transcription start site region 126276	878 bp upstream
Tssr126277	transcription start site region 126277	943 bp upstream
Tssr126278	transcription start site region 126278	979 bp upstream
Tssr129260	transcription start site region 129260	1501 bp upstream
Tssr129261	transcription start site region 129261	1462 bp upstream
Tssr129262	transcription start site region 129262	1449 bp upstream
Tssr129263	transcription start site region 129263	1433 bp upstream
Tssr129264	transcription start site region 129264	1380 bp upstream
Tssr129265	transcription start site region 129265	1 bp downstream
Tssr129266	transcription start site region 129266	36 bp downstream
Tssr129267	transcription start site region 129267	68 bp downstream
Tssr129268	transcription start site region 129268	130 bp downstream
Tssr129269	transcription start site region 129269	838 bp downstream
Tssr129270	transcription start site region 129270	859 bp downstream
Tssr129271	transcription start site region 129271	903 bp downstream