rs13474517 SNP Detail

Summary

• ID
  rs13474517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134335413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTAAGGG AAGGGAGAAA
  AGATTATGGG TGTAATACGC TCTGATTTGG TTTTCATTAC ATCTCAAATG TGGCATTTTC
  TTTCTTTCTG CCTCATCAGG TTTATCTGAA AGGTGTGCAC CCCAAATTTC CTGAAGGAGG
  GAAGATGTCT CAATACCTGG ATAGCCTGAA GATTGGGGAT ATGGTGGAGT TCCGGGGGCC
  R
  AGCGGGTTGC TCAGTTATGC TGGGAAAGGT GAGTATCTGT CCTTTCCTTC CTACAGTCTC
  ACTTCTCCTG TCCCTACAGT CCAAGGCCCC CAGGCCCAGC CCCAGTCCCA TCTTCAACCT
  CCTTGTTCCA TTTCCCCCCA GAATCTGCAT GTGTGCATGG GTGTACCTGG GCAAAGTCTC
  CTGAAGCAAC CATGCTATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351517974	MGP_WTSI_1_136304252	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13474517					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351517974	MGP_WTSI_1_136304252	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134335413 () rs orientation: forward

Symbol	Name	Function Class
Cpgi767	CpG island 767	1270 bp distal
Cyb5r1	cytochrome b5 reductase 1	within coordinates
Rr372070	regulatory region 372070	1569 bp downstream
Tssr217	transcription start site region 217	1705 bp downstream
Tssr218	transcription start site region 218	1613 bp downstream
Tssr8875	transcription start site region 8875	1951 bp downstream
Tssr8876	transcription start site region 8876	1939 bp downstream
Tssr8877	transcription start site region 8877	1883 bp downstream
Tssr8878	transcription start site region 8878	1862 bp downstream
Tssr8879	transcription start site region 8879	1670 bp downstream
Tssr8880	transcription start site region 8880	1646 bp downstream
Tssr8881	transcription start site region 8881	1349 bp downstream
Tssr8882	transcription start site region 8882	1318 bp downstream
Tssr8883	transcription start site region 8883	1290 bp downstream
Tssr8884	transcription start site region 8884	411 bp upstream