rs13474557 SNP Detail

Summary

• ID
  rs13474557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172303741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG ATGAGGATCC TGAGGAAGTG
  R
  TTGGTGTCCT GCAAGAGTCT ATCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49751702	NES13028071	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A		G	A	A	A		G	A	A		A
ss120011357	PARCsnp_1.19757	PARC_SEQ	INBRED	f	SNP							G		A
ss120014419	PARCsnp_1.09788	PARC_SEQ	INBRED	f	SNP							G		A
ss146193220	ENSMUSSNP4311653	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss320125599	CHEV_1_174406305	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs13474557					SNP	A	A	A	A	G	A	G	G	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751702	NES13028071	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172303741 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	1360 bp downstream
Gm70809	predicted gene, 70809	1201 bp downstream
Gm70814	predicted gene, 70814	543 bp upstream
Rr423578	regulatory region 423578	806 bp distal
Slamf9	SLAM family member 9	Coding-NonSynonymous
Tssr10198	transcription start site region 10198	790 bp downstream
Tssr10199	transcription start site region 10199	762 bp downstream
Tssr10200	transcription start site region 10200	740 bp downstream
Tssr15219	transcription start site region 15219	974 bp upstream