rs13474615 SNP Detail

Summary

• ID
  rs13474615
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118308432 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTCAC CTGAGCCTTG GAACATCCTT
  Y
  GCAGTGTGGC TGTCTTCGCC GTGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	SM/J
ss37242595	NES08509550	PERLEGEN	MM_PANEL2	r	SNP			A		G		A
ss38758760	mCV24191012	ABI	CRAMUS_MOUSE	r	SNP	A	A		G		A
ss132901451	ENSMUSSNP3197285	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	A
ss323870304	CHEV_11_118278920	CHEVERUD	SCREENING_POP	r	SNP								A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	SM/J
rs13474615					SNP	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37242595	NES08509550	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118308432 () rs orientation: reverse

Symbol	Name	Function Class
Cant1	calcium activated nucleotidase 1	within coordinates
Cpgi4233	CpG island 4233	955 bp proximal
Gm72450	predicted gene, 72450	1481 bp upstream
Rr403174	regulatory region 403174	1269 bp upstream
Rr461043	regulatory region 461043	1823 bp distal
Rr461044	regulatory region 461044	1322 bp distal
Rr461045	regulatory region 461045	326 bp proximal
Rr461046	regulatory region 461046	1407 bp proximal
Rr461047	regulatory region 461047	1492 bp proximal
Tssr106139	transcription start site region 106139	1617 bp upstream
Tssr112167	transcription start site region 112167	1782 bp upstream
Tssr112168	transcription start site region 112168	1765 bp upstream
Tssr112169	transcription start site region 112169	1350 bp downstream
Tssr112170	transcription start site region 112170	1412 bp downstream
Tssr112171	transcription start site region 112171	1510 bp downstream