rs13474766 SNP Detail

Summary

• ID
  rs13474766
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108886649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAA AGGTGGGGTG GAGGGCCTAG
  R
  TGGTATCTCC GGCCCAGATG TGAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46396416	mCV23599030	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
ss136953540	ENSMUSSNP4041505	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss323192973	CHEV_9_108960095	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13474766					SNP	A	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108886649 () rs orientation: forward

Symbol	Name	Function Class
Gm53191	predicted gene, 53191	352 bp downstream
Rr686955	regulatory region 686955	1959 bp distal
Rr686956	regulatory region 686956	5 bp proximal
Rr686957	regulatory region 686957	1660 bp proximal
Shisa5	shisa family member 5	within coordinates
Trex1	three prime repair exonuclease 1	351 bp downstream
Tssr87212	transcription start site region 87212	1948 bp downstream
Tssr87213	transcription start site region 87213	1590 bp downstream
Tssr87214	transcription start site region 87214	1518 bp downstream
Tssr87215	transcription start site region 87215	1287 bp downstream
Tssr87216	transcription start site region 87216	1234 bp downstream
Tssr87217	transcription start site region 87217	1161 bp downstream
Tssr87218	transcription start site region 87218	861 bp downstream
Tssr87219	transcription start site region 87219	628 bp downstream
Tssr87220	transcription start site region 87220	540 bp downstream
Tssr87221	transcription start site region 87221	321 bp downstream
Tssr87222	transcription start site region 87222	272 bp downstream
Tssr91571	transcription start site region 91571	134 bp downstream
Tssr91572	transcription start site region 91572	655 bp downstream
Tssr91573	transcription start site region 91573	812 bp downstream
Tssr91574	transcription start site region 91574	1042 bp downstream
Tssr91575	transcription start site region 91575	1093 bp downstream
Tssr91576	transcription start site region 91576	1178 bp downstream
Tssr91577	transcription start site region 91577	1635 bp downstream