rs13474901 SNP Detail

Summary

• ID
  rs13474901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103224132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC CTGTTTTTCA TTAGGTGTTA
  Y
  CTGGTCATCC AGAACCTTTA CTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46409716	mCV22613543	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T		T
ss52037668	NES15052412	PERLEGEN	MM_PANEL2	f	SNP			C	T	C	C	C		C	T	C	T		C	C	T		C
ss136877135	ENSMUSSNP6865642	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							T
ss323160933	CHEV_9_103249263	CHEVERUD	SCREENING_POP	f	SNP													T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs13474901					SNP	C	C	C	T	C	C	C	T	C	T	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52037668	NES15052412	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103224132 () rs orientation: forward

Symbol	Name	Function Class
Rr198506	regulatory region 198506	1132 bp distal
Rr207098	regulatory region 207098	within coordinates
Topbp1	topoisomerase (DNA) II binding protein 1	within coordinates
Tssr91191	transcription start site region 91191	787 bp downstream