rs13474998 SNP Detail

Summary

• ID
  rs13474998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143907630 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             TAGTCATTTC TGCAAAGGAT CATGCCGCTC TTGGTGTAAC AGGACGTGCC
  Y
  ATGTCGCCCA GCTGCGCCTG GCAGCAGGAG CACTTGAGGC AGCGGCTATG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45473785	mCV23166730	ABI	CRAMUS_MOUSE	r	SNP	G	A	A	A
ss136029268	ENSMUSSNP2968729	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs13474998					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143907630 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13894	CpG island 13894	within coordinates
Lmo4	LIM domain only 4	Coding-Synonymous
Rr375847	regulatory region 375847	1196 bp downstream
Rr406521	regulatory region 406521	1145 bp proximal
Rr586598	regulatory region 586598	1256 bp distal
Rr586599	regulatory region 586599	116 bp proximal
Rr586600	regulatory region 586600	453 bp proximal
Tssr35962	transcription start site region 35962	926 bp upstream
Tssr35963	transcription start site region 35963	46 bp downstream
Tssr35964	transcription start site region 35964	93 bp downstream
Tssr35965	transcription start site region 35965	431 bp downstream
Tssr35966	transcription start site region 35966	481 bp downstream
Tssr35967	transcription start site region 35967	710 bp downstream