rs13475086 SNP Detail

Summary

• ID
  rs13475086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164795295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAG CGGGCTTCTC CCGCGTCGTC
  Y
  CGGGAAGGCT CTGCTGTTCA GCAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37515773	NES08880386	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C		T	C	C	C		C
ss148233711	ENSMUSSNP3056136	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
ss320607219	CHEV_2_164778875	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13475086					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515773	NES08880386	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164795295 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12681	CpG island 12681	within coordinates
Mmp9	matrix metallopeptidase 9	Coding-NonSynonymous
Rr569776	regulatory region 569776	1415 bp distal
Rr569777	regulatory region 569777	731 bp distal
Rr569778	regulatory region 569778	55 bp proximal
Tssr21693	transcription start site region 21693	941 bp downstream