rs13475116 SNP Detail

Summary

• ID
  rs13475116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64083465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GAAGATAAGG TTGAAGGTTA CAAGAAGACC AAGGAGGCTG TTCAGCTGCT
  Y
  AAGAAACTCA AAGCTTGGAA TGACATCAAA AAGGTAAGCT CACCATATAC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61410342	NES16794886	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13475116					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61410342	NES16794886	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64083465 () rs orientation: forward

Symbol	Name	Function Class
Gm22455	predicted gene, 22455	940 bp upstream
Gm22571	predicted gene, 22571	241 bp downstream
Gm23136	predicted gene, 23136	478 bp upstream
Gm23344	predicted gene, 23344	1068 bp downstream
Rpl4	ribosomal protein L4	within coordinates
Rr368800	regulatory region 368800	1990 bp downstream
Snord16a	small nucleolar RNA, C/D box 16A	661 bp downstream
Tssr85597	transcription start site region 85597	1211 bp downstream
Tssr85598	transcription start site region 85598	757 bp downstream
Tssr85599	transcription start site region 85599	570 bp downstream
Tssr85600	transcription start site region 85600	786 bp upstream
Tssr85601	transcription start site region 85601	1191 bp upstream
Tssr85602	transcription start site region 85602	1258 bp upstream
Tssr85603	transcription start site region 85603	1529 bp upstream
Tssr85604	transcription start site region 85604	1569 bp upstream
Tssr90132	transcription start site region 90132	1605 bp downstream