rs13475502 SNP Detail

Summary

• ID
  rs13475502
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:15197388 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAAAC AGAAGAGGCT GACGTGGGGC
  R
  TGTTTCGCTT CTTAGCAAGA GTCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39662141	mCV25032241	ABI	CRAMUS_MOUSE	r	SNP	C	T	C	C
ss146654521	ENSMUSSNP15958	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	T		C
ss325532714	CHEV_18_15222840	CHEVERUD	SCREENING_POP	r	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13475502					SNP	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15197388 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi9734	CpG island 9734	within coordinates
Gm58434	predicted gene, 58434	within coordinates
Kctd1	potassium channel tetramerisation domain containing 1	within coordinates
Rr393314	regulatory region 393314	1284 bp upstream
Rr534350	regulatory region 534350	317 bp distal
Tssr152510	transcription start site region 152510	714 bp upstream
Tssr152511	transcription start site region 152511	676 bp upstream
Tssr152512	transcription start site region 152512	217 bp upstream
Tssr152513	transcription start site region 152513	191 bp upstream
Tssr152514	transcription start site region 152514	176 bp upstream
Tssr152515	transcription start site region 152515	105 bp upstream
Tssr152516	transcription start site region 152516	within coordinates
Tssr152517	transcription start site region 152517	12 bp downstream
Tssr152518	transcription start site region 152518	32 bp downstream
Tssr152519	transcription start site region 152519	90 bp downstream
Tssr152520	transcription start site region 152520	116 bp downstream