rs13475503 SNP Detail

Summary

• ID
  rs13475503
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:56438256 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TCTGGGAACC ACTCCCTCCC
  CTCCCTTCGT GCTTCAAATT CTAAGCTTAA TTTCCATCCG GGTTCTTCAG CCTCGTTCCC
  GGGTAGTATA AAGATTGCAG TCTCCTTTGT TCGCCCTCGT TGCGCAGTCG TCCTAGCGTC
  ATTTCTGTTC CGTTCTGAAA ATCGGTAGCT GTCACTGGTG CGGCGCTGCT CGGGAGGTCC
  S
  GTCGGCGAGC TCAGAGGAGC TTGAGACCGT CGCAGTCCCC TCGGGTAGGA CTTTCCTTTC
  CTTGGCCTGT TTTCCATACA GACTTGTTAG AGCTGGATGT CATTTGTTTC CCGGGAGATA
  GTGGCGGCGG GCGCCATTTT AAGACACCCA AAGGTGTCAA CCTATTTAAA GCAGAAGGGG
  TGGAAGCAGC ACATTATGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38387872	NES09719011	PERLEGEN	MM_PANEL2	r	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13475503					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38387872	NES09719011	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:56438256 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi22733	CpG island 22733	within coordinates
Rbmx	RNA binding motif protein, X chromosome	within coordinates
Rr8653	regulatory region 8653	within coordinates
Snord61	small nucleolar RNA, C/D box 61	1387 bp upstream
Tssr163454	transcription start site region 163454	75 bp downstream
Tssr163455	transcription start site region 163455	133 bp downstream