rs13475534 SNP Detail

Summary

• ID
  rs13475534
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121282769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTC TCCCAAGAAC TTTTGGAATG
  K
  CCTTAAAGTG TTTCCTTAAA ATTGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45304621	mCV22586537	ABI	CRAMUS_MOUSE	f	SNP		T	G	T
ss147386405	ENSMUSSNP6280092	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320483220	CHEV_2_121278024	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13475534					SNP	T	T	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121282769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12159	CpG island 12159	1962 bp distal
Gm22953	predicted gene, 22953	1518 bp upstream
Rr55495	regulatory region 55495	968 bp distal
Rr55496	regulatory region 55496	568 bp distal
Serf2	small EDRK-rich factor 2	within coordinates
Serinc4	serine incorporator 4	within coordinates
Tssr19772	transcription start site region 19772	1975 bp downstream