rs13475999 SNP Detail

Summary

• ID
  rs13475999
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:96083185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATACAA AATACTATGT
  TGATAACAAT TTTTGACATG GGCTTACTAC ATAACTTTGG CCTGGAATTC ACCACAAAGA
  CCTGAATAGA CTAAGATCTA TATGCCTTTG TCTTCTATTA AAGACATGTC ACTCTATCTA
  CTAATACGTT TATTTAATGT TTGATAATTG TATAAGTTCT CTAACAGGAG GGCTGAAAAC
  W
  AGAAAAGGTA AAAAGCATAA ATCCATTTAT CTTATATTTT ACAAGCTCAA ATATTGGAAA
  ACTGGCCCGC TTAATACATA GACAGAAAAA TGACCAATTT AGGACTGCAG GGAAGATTGT
  CTCTTTGGAA CTTTTAACAA CCATTTCTCT AGAAAGATAC TTGATGTATC TGTGTAGTGC
  TCCAAGGTAA ACAGACTGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16373163	01.096.327	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	A	T	A	A	T	A	A	A	A	A	A	A	T	A	A	T	T	T	T	A	T	T	A	T	A	T	T	T	T	T	A	A	T	T	T	A	A	T	A	T	T	A	A	T	T
ss45134951	mCV23090457	ABI	CRAMUS_MOUSE	f	SNP	T	T	A						A											T
ss144978491	ENSMUSSNP5747776	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A																	T
ss319850682	CHEV_1_98052037	CHEVERUD	SCREENING_POP	f	SNP																									A																	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13475999					SNP	T	T	A	T	A	A	T	A	A	A	A	A	A	A	T	A	A	T	T	T	T	A	T	T	A	T	A	T	T	T	T	T	A	A	T	T	T	A	A	T	A	T	T	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:96083185 () rs orientation: forward

Symbol	Name	Function Class
Gm69977	predicted gene, 69977	540 bp downstream
Rr371742	regulatory region 371742	844 bp upstream