rs13476184 SNP Detail

Summary

• ID
  rs13476184
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153060621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT CAGAGACTGT TTTCACTCTC
  R
  GAATGTTTTC TACTAGGTTT CAACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16373398	01.153.754	TWGNF	TWGNF-Mouse-2	f	SNP	G	G			A	G	G	A	A	A	A	A	A	A	G	A	A	G	G		G	G	A	G	A	G	A	G	G	G	G	G	G	G	G	A	G		A	A	G	G	G	G	G	A
ss45147151	mCV24779725	ABI	CRAMUS_MOUSE	f	SNP	G	G	A						A											G
ss60822421	NES16493704	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G		A												G		G									G			G				G							G
ss145737869	ENSMUSSNP6580390	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A																	G
ss320071221	CHEV_1_155032005	CHEVERUD	SCREENING_POP	f	SNP																									A																	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13476184					SNP	G	G	A	A	A	G	G	A	A	A	A	A	A	A	G	A	A	G	G	G	G	G	A	G	A	G	A	G	G	G	G	G	G	G	G	A	G	G	A	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822421	NES16493704	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153060621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	895 bp proximal
Lamc2	laminin, gamma 2	within coordinates
Rr28719	regulatory region 28719	within coordinates
Tssr14250	transcription start site region 14250	1136 bp downstream
Tssr14251	transcription start site region 14251	1196 bp downstream
Tssr14252	transcription start site region 14252	1227 bp downstream
Tssr14253	transcription start site region 14253	1250 bp downstream
Tssr14254	transcription start site region 14254	1267 bp downstream