rs13476262 SNP Detail

Summary

• ID
  rs13476262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178233631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCC GCGGGGTCCC GCAGGGTTCG
  Y
  GCTGGATGTC TCCCGGGCGA CCGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16373514	01.179.090	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	C	C	T	T	C	T	T	T	T	T	C	C	T	C	T	C	C	C	T	T	T	C	C	T	T	T	C	C	C	T	T	T	T	C	T	T		T	T	T	T	T	T	T	T	C	C
ss45106983	mCV22364012	ABI	CRAMUS_MOUSE	f	SNP		T	C						T											C
ss51413006	NES14449898	PERLEGEN	MM_PANEL2	f	SNP	T				T	T		T							T					C		T			C							T			T				T									C
ss146355583	ENSMUSSNP1199937	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C																	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13476262					SNP	T	T	C	C	T	T	C	T	T	T	T	T	C	C	T	C	T	C	C	C	T	T	T	C	C	T	T	T	C	C	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51413006	NES14449898	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178233631 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	within coordinates
Efcab2	EF-hand calcium binding domain 2	19 bp upstream
Gm70920	predicted gene, 70920	within coordinates
Gm70923	predicted gene, 70923	423 bp upstream
Rr29069	regulatory region 29069	within coordinates
Rr372517	regulatory region 372517	within coordinates
Tssr10392	transcription start site region 10392	46 bp downstream
Tssr10393	transcription start site region 10393	32 bp downstream
Tssr10394	transcription start site region 10394	21 bp downstream
Tssr10395	transcription start site region 10395	within coordinates
Tssr10396	transcription start site region 10396	6 bp upstream
Tssr10397	transcription start site region 10397	429 bp upstream
Tssr15493	transcription start site region 15493	349 bp downstream