rs13476293 SNP Detail

Summary

• ID
  rs13476293
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:187995416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTGCCTC ACAGGGCGTT TTCCCAAGGC TGGAGAATGT
  GGGTGCTTTC AGGAAGGTAT CCACTGTGCC AACCCACGCC ACGTGTGGAT TCCCAGGCCC
  W
  AGCACTTTTT GTCGTAGCCC GGTGGCGGCT GAGCATGTGC AACTGTGTAC GGAGAGGCTG
  TGTATCCAGG ATTGCCCCTA CCGCTCTGCC TCTCCTCTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16373553	01.188.584	TWGNF	TWGNF-Mouse-2	f	SNP	A	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	A	A	A	T	T	A	A	T	A	A	T	T	A	A	T	T	A		A	A	T	T	A	T	T	T	T	T
ss45067867	mCV23594109	ABI	CRAMUS_MOUSE	f	SNP		A	T						T										A
ss51416324	NES14451696	PERLEGEN	MM_PANEL2	f	SNP	A			T	T	A									T				A				A							A				A									T
ss146472092	ENSMUSSNP5509389	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
ss320187309	CHEV_1_190087098	CHEVERUD	SCREENING_POP	f	SNP																								T															A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13476293					SNP	A	A	T	T	T	?	T	T	T	T	T	T	T	T	T	A	A	A	A	T	T	A	A	T	A	A	T	T	A	A	T	T	A	A	A	A	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51416324	NES14451696	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:187995416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1191	CpG island 1191	within coordinates
Tssr368	transcription start site region 368	316 bp downstream
Tssr10680	transcription start site region 10680	1227 bp downstream
Tssr10681	transcription start site region 10681	1191 bp downstream
Ush2a	usherin	within coordinates