rs13476305 SNP Detail

Summary

• ID
  rs13476305
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191176960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGATTAAAT GGCTGTGTGT ATTTTGACTA GAAGCCAACA
  GCTGGGCAAG GTAAGAGGGA GACATGGTGC CACGGTCAGC CAGGAATGAG AATCAGTCAG
  R
  CTTCTGTGCA GATAACCCAA GGCCTTGCAC ATGGATTCCC CCCAGGACTT CAACTTTGTT
  CTTTAGAGAA AGGTGTTTTT TTTTGTTTTG TTTTTTTAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16373566	01.195.232	TWGNF	TWGNF-Mouse-2	f	SNP	A	G	G		G		A			G	G	G		G	G	A		A	G	G	G	A	A	G	G	G	G	A	G	G	A	G	A		A	A	A	A	A	A	G
ss45042887	mCV23930922	ABI	CRAMUS_MOUSE	f	SNP		G	G						G								A
ss49546437	NES12907401	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G		G					G				A		G			A				G		A			A			A						A
ss146505933	ENSMUSSNP2558535	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G														A
ss320195292	CHEV_1_193268642	CHEVERUD	SCREENING_POP	f	SNP																							A														A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13476305					SNP	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	A	A	G	G	G	A	A	G	G	G	G	A	G	G	A	G	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49546437	NES12907401	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191176960 () rs orientation: forward

Symbol	Name	Function Class
Gm32200	predicted gene, 32200	within coordinates
Rr372646	regulatory region 372646	874 bp upstream
Tssr15793	transcription start site region 15793	1040 bp downstream