rs13476348 SNP Detail

Summary

• ID
  rs13476348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11175662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGC CAACATCCTG TCATTTGTAT
  R
  TAACCTTTTA AAAGCAATTG AAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	KK/HlJ	LG/J	LP/J	MAI/Pas	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss16373622	02.011.158	TWGNF	TWGNF-Mouse-2	f	SNP			G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
ss45367687	mCV23181147	ABI	CRAMUS_MOUSE	f	SNP	G	G					A											G
ss146296672	ENSMUSSNP4674907	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G																G
ss320217718	CHEV_2_11092478	CHEVERUD	SCREENING_POP	f	SNP																						G															G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	KK/HlJ	LG/J	LP/J	MAI/Pas	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs13476348					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11175662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11198	CpG island 11198	1161 bp proximal
Gm74583	predicted gene, 74583	within coordinates
Prkcq	protein kinase C, theta	1260 bp upstream
Rr37311	regulatory region 37311	662 bp distal
Rr55368	regulatory region 55368	938 bp proximal
Rr57618	regulatory region 57618	within coordinates
Tssr402	transcription start site region 402	1289 bp upstream
Tssr403	transcription start site region 403	1531 bp upstream
Tssr16098	transcription start site region 16098	1030 bp upstream
Tssr16099	transcription start site region 16099	1182 bp upstream
Tssr16100	transcription start site region 16100	1203 bp upstream
Tssr16101	transcription start site region 16101	1229 bp upstream
Tssr16102	transcription start site region 16102	1310 bp upstream
Tssr16103	transcription start site region 16103	1331 bp upstream
Tssr16104	transcription start site region 16104	1365 bp upstream
Tssr16105	transcription start site region 16105	1437 bp upstream
Tssr16106	transcription start site region 16106	1458 bp upstream
Tssr16107	transcription start site region 16107	1478 bp upstream
Tssr16108	transcription start site region 16108	1505 bp upstream
Tssr16109	transcription start site region 16109	1537 bp upstream
Tssr22604	transcription start site region 22604	764 bp upstream