rs13476412 SNP Detail

Summary

• ID
  rs13476412
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31345524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG ATGTGGATGA GTGTGCGGGC
  R
  ACACCCACCT CTGCCAGGAG GAACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16373696	02.031.721	TWGNF	TWGNF-Mouse-2	f	SNP	A	A	G	G	A	G	G	A	A	A	A	A	A	G	G	A	G	G	A	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	A	G	A	G	G	A	A	G	G	G	G	G
ss45243397	mCV23581690	ABI	CRAMUS_MOUSE	f	SNP	A	A	G						A											G
ss320222257	CHEV_2_31311032	CHEVERUD	SCREENING_POP	f	SNP																										A																G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13476412					SNP	A	A	G	G	A	G	G	A	A	A	A	A	A	G	G	A	G	G	A	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	A	G	A	G	G	A	A	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31345524 () rs orientation: forward

Symbol	Name	Function Class
Gm74859	predicted gene, 74859	within coordinates
Hmcn2	hemicentin 2	within coordinates
Rr554632	regulatory region 554632	85 bp proximal
Tssr17185	transcription start site region 17185	1712 bp downstream
Tssr17186	transcription start site region 17186	1044 bp downstream
Tssr17187	transcription start site region 17187	956 bp downstream
Tssr17188	transcription start site region 17188	724 bp downstream