rs13476418 SNP Detail

Summary

• ID
  rs13476418
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:33108350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAC TCCAGCAAGC CTGGCCGTGG
  W
  AACTACTGCC ACACAACACC AGCGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16373705	02.033.490	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	A	A	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	A	A	A	A	T	A	A	T	T	T	A	T	A	A	A	A	T	A	T		T	T	T	T	A	T	A	T	T	T
ss37398138	NES08753253	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	T	A		T							T					A		A			A					A		A			A				T									T
ss45241397	mCV22898825	ABI	CRAMUS_MOUSE	f	SNP	T	T	A						T											A
ss146405250	ENSMUSSNP1615629	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A																	A
ss320222474	CHEV_2_33073858	CHEVERUD	SCREENING_POP	f	SNP																										A																		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13476418					SNP	T	T	A	A	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	A	A	A	A	T	A	A	T	T	T	A	T	A	A	A	A	T	A	T	T	T	T	T	T	A	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398138	NES08753253	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33108350 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Angptl2	angiopoietin-like 2			Intron
Ralgps1	Ral GEF with PH domain and SH3 binding motif 1			Intron
				Noncoding-Transcript-Variant
Rr555184	regulatory region 555184			583 bp distal
Rr555185	regulatory region 555185			777 bp proximal
Rr555186	regulatory region 555186			1050 bp proximal