rs13476578 SNP Detail

Summary

• ID
  rs13476578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74534998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCT CTGCTGGGCA GATCCAGGAG
  Y
  CTTGCTGGAG GAGAGACCGT CTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16373905	02.075.875	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	T	T	T	T	T	C	C	C	C	T	C	T	C	C	T	C	T	C	C	T	T	C	T	C	T	T	C	C	C	T	T	C	T	C	T	C	T	C	C	C	C	C	T	C	C	C
ss45252437	mCV23154354	ABI	CRAMUS_MOUSE	f	SNP	T	T	T						C											C
ss146763747	ENSMUSSNP2382867	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13476578					SNP	T	T	T	T	T	T	T	C	C	C	C	T	C	T	C	C	T	C	T	C	C	T	T	C	T	C	T	T	C	C	C	T	T	C	T	C	T	C	T	C	C	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74534998 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11800	CpG island 11800	within coordinates
Gm38462	predicted gene, 38462	within coordinates
Gm75671	predicted gene, 75671	1216 bp downstream
Hoxd8	homeobox D8	mRNA-UTR
Igs15	intergenic site 15	within coordinates
Rr44607	regulatory region 44607	1998 bp distal
Rr559361	regulatory region 559361	1607 bp distal
Rr559363	regulatory region 559363	405 bp distal
Rr559364	regulatory region 559364	29 bp distal
Rr559365	regulatory region 559365	within coordinates
Rr559366	regulatory region 559366	76 bp proximal
Rr559367	regulatory region 559367	93 bp proximal
Rr559368	regulatory region 559368	1707 bp proximal
Tssr18420	transcription start site region 18420	109 bp downstream
Tssr18421	transcription start site region 18421	6 bp downstream
Tssr18422	transcription start site region 18422	171 bp upstream
Tssr18423	transcription start site region 18423	207 bp upstream
Tssr18424	transcription start site region 18424	263 bp upstream
Tssr18425	transcription start site region 18425	392 bp upstream
Tssr18426	transcription start site region 18426	432 bp upstream
Tssr18427	transcription start site region 18427	491 bp upstream
Tssr18428	transcription start site region 18428	524 bp upstream
Tssr18429	transcription start site region 18429	686 bp upstream
Tssr18430	transcription start site region 18430	1084 bp upstream
Tssr24623	transcription start site region 24623	1161 bp downstream