rs13476897 SNP Detail

Summary

• ID
  rs13476897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166557505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCATAGCAG CACACAGTAC CCGGGATGTC CCAGGAGCAC
  CCCGTCCACA GTTGTGAGCC GTCGGTGCCT TCTAAGGTAG CCAGAGAACC TCTGACACAC
  R
  CAACACAGCT AGCTGGGTTA GGTAGTGCTA AGTAAACACT AGTCCCCTTC TCAGCCTGTG
  ACCAAGGCTG GAGGTTAGCC TCACATTTAC ACATGGGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BUB/BnJ	C57BL/6J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16374328	02.168.580	TWGNF	TWGNF-Mouse-2	f	SNP	A	A		A	A	G	G	A	G	A	A	A	A	A	G	A	A	A	A	G	A	G	A	G	A	A	A	G	A	A	A	A	G	A	A	A	A
ss45216215	mCV22936782	ABI	CRAMUS_MOUSE	f	SNP	A	A	G			G							A
ss148258391	ENSMUSSNP94192	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G										A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BUB/BnJ	C57BL/6J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13476897					SNP	A	A	G	A	A	G	G	A	G	A	A	A	A	A	G	A	A	A	A	G	A	G	A	G	A	A	A	G	A	A	A	A	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166557505 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12723	CpG island 12723	958 bp distal
Gm46777	predicted gene, 46777	1538 bp upstream
Gm57440	predicted gene, 57440	603 bp downstream
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	1753 bp upstream
Rr397493	regulatory region 397493	1512 bp downstream
Rr570356	regulatory region 570356	1808 bp distal
Rr570357	regulatory region 570357	1263 bp distal
Tssr21773	transcription start site region 21773	1469 bp downstream
Tssr27709	transcription start site region 27709	1842 bp upstream
Tssr27710	transcription start site region 27710	1758 bp upstream