rs13476945 SNP Detail

Summary

• ID
  rs13476945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180876753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCAGGGTG GACACTTCTG CTGCTGCATC TCTAGAGGCT
  GAGTTCCCGC TTGCTGTGTC TTCTGCTGCG ACTGCCGCAG TCTGTGCCTT GGCTGCTGCC
  Y
  CGGCTCTGGT CTCTGCCTTC ACCGTGACCA TGGTCCCTTC AGCTATGAGC CTTTGTGGGC
  CCTGGGCCAT AGATTTTTGC TCTGTCTCTG GGCCCCTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16374384	02.180.654	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	C	T	T	C	C	T	T	T	C	C	C	T	C	C	C	T	T	T	C	C	T	T	C	C	C	T	T	T	C	T	T	C	T	C	T	T	C	T	T	T	C
ss45358355	mCV22974193	ABI	CRAMUS_MOUSE	f	SNP		T	C					T									C
ss148398973	ENSMUSSNP4429695	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C														C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13476945					SNP	T	T	C	T	T	C	C	T	T	T	C	C	C	T	C	C	C	T	T	T	C	C	T	T	C	C	C	T	T	T	C	T	T	C	T	C	T	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180876753 () rs orientation: forward

Symbol	Name	Function Class
Helz2	helicase with zinc finger 2, transcriptional coactivator	within coordinates
Rr41658	regulatory region 41658	848 bp proximal
Tssr28190	transcription start site region 28190	832 bp upstream
Tssr28191	transcription start site region 28191	1159 bp downstream
Tssr28192	transcription start site region 28192	1269 bp downstream