rs13476985 SNP Detail

Summary

• ID
  rs13476985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:14952955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGA GACCGGCAGT CCCCTGTGGA
  Y
  ATTGACACAG CAACTGCCCA GCATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16374436	03.014.980	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	T	C	T	C	T	T	C	C	C	T	T	C	C	T	T	C	C	T	T	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C	T	T	C	T	T	C	C
ss45435878	mCV23564285	ABI	CRAMUS_MOUSE	f	SNP	C	C	T						C											T
ss134618306	ENSMUSSNP589353	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T																	T
ss320667958	CHEV_3_14887895	CHEVERUD	SCREENING_POP	f	SNP																										C																	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13476985					SNP	C	C	T	C	T	C	T	T	C	C	C	T	T	C	C	T	T	C	C	T	T	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C	T	T	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14952955 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	Coding-Synonymous
Cpgi12992	CpG island 12992	681 bp distal
Rr573722	regulatory region 573722	1457 bp distal
Rr573723	regulatory region 573723	1735 bp distal
Rr573724	regulatory region 573724	321 bp distal
Rr573725	regulatory region 573725	1388 bp distal
Rr573726	regulatory region 573726	705 bp distal
Rr573727	regulatory region 573727	652 bp distal
Rr573728	regulatory region 573728	470 bp distal
Rr573729	regulatory region 573729	743 bp proximal
Rr573730	regulatory region 573730	1174 bp proximal
Tssr826	transcription start site region 826	1575 bp downstream
Tssr827	transcription start site region 827	1468 bp downstream
Tssr828	transcription start site region 828	1412 bp downstream
Tssr829	transcription start site region 829	1326 bp downstream
Tssr830	transcription start site region 830	1280 bp downstream
Tssr831	transcription start site region 831	1247 bp downstream
Tssr832	transcription start site region 832	1174 bp downstream
Tssr28466	transcription start site region 28466	1195 bp downstream
Tssr28467	transcription start site region 28467	1036 bp downstream
Tssr28468	transcription start site region 28468	479 bp downstream