rs13477206 SNP Detail

Summary

• ID
  rs13477206
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:76476233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAACAAAC TCTTGATACT
  TTTTTAGTAA GCACATTGAA CAGTTGTAAG TTTCTGCACT AGCGGAATTC CACTGCACTA
  AGAAATTTCT CTGACAAGAT CAGAAATATA GAAGGATGTA TGTATACAGA AATAAGAACC
  TAGAAAGGAT GTATGTATAC AGAAATAAGA ATCTAGAAAG AAGATTGATG ATGTTAAAAC
  K
  TCCATTTAGT AGTAAGTCAG GCTGAAGCCT GTGGTCTTTC CAACTATGAT CTCTGAGCCA
  TATTTACAGT AGGATATAAG CTTAGATTTT TTTTCAAAAT ACACTTTAAT TAGGGTTTTC
  AAACACTTCA ACCTCCTTTC TAGCGCAGTG ATCAAAGATA GTGGAAGATG ATGGTTAATA
  GGCAAGGGGA ATGTAGACCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	LG/J	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/Ph	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16374701	03.077.489	TWGNF	TWGNF-Mouse-2	f	SNP				G		G	T	T	T	G		T	G	T	G	G	G	T	T	G	G	G	T	T	T
ss45535331	mCV24588137	ABI	CRAMUS_MOUSE	f	SNP	T	T	T		G						G
ss135341152	ENSMUSSNP5405444	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	LG/J	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/Ph	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13477206					SNP	T	T	T	G	G	G	T	T	T	G	G	T	G	T	G	G	G	T	T	G	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:76476233 () rs orientation: forward

Symbol	Name	Function Class
Fstl5	follistatin-like 5	Intron
Rr578399	regulatory region 578399	1384 bp distal