rs13477219 SNP Detail

Summary

• ID
  rs13477219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79958112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTCCAATG CACCCATGTA
  AATAAAACTC TGTTGCTATG CAATACACAA TAAGAAAGTA GATCATGTAG AGAAAAGGAT
  CAAAACACAA AGCGTCCAAG CTCCCATCTA AATGAGTTTT TAAGACAAAA TAACAATCAA
  ATTATAATTA TACACCAGAA GAAAAGAGCA AAAGCTTACA TTATAAATGA GTAAAACTAG
  Y
  TCAAAGCTAA TGGGAATCGA TAGCTAAATA TAGGCAAGCT GAACTATATA TAACTTCAAT
  TCAGAATGTT CTAGAAGACA TTCAAAAAAC CTCGAAAATT AAAAATATAT GTAAAAAAAT
  TTAGTAGACT GCAGAAAGAA TGTGATCATG CTTTAGGGAA AAGAAAGGGA AATTAAACTT
  GAGAAACTAT AGTCATGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16374717	03.080.994	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	C	T	T	T	T	C	T	T	T	T	T	T	C	C	C	T	T	T	T	C	C	T	T	C	C	C	C	T	C	T	T	C	T	C	C	T	C	T	T	C	T	T	T	C
ss45538501	mCV23377027	ABI	CRAMUS_MOUSE	f	SNP		C	C						T										T
ss135378775	ENSMUSSNP6148072	ENSEMBL	ENSEMBL_Sanger	f	SNP			C																T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13477219					SNP	C	C	C	T	T	T	T	C	T	T	T	T	T	T	C	C	C	T	T	T	T	C	C	T	T	C	C	C	C	T	C	T	T	C	T	C	C	T	C	T	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79958112 () rs orientation: forward

Symbol	Name	Function Class
Gm65495	predicted gene, 65495	within coordinates
Rr578632	regulatory region 578632	1793 bp distal
Rr578633	regulatory region 578633	726 bp distal
Rr578634	regulatory region 578634	1153 bp proximal