rs13477272 SNP Detail

Summary

• ID
  rs13477272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95591405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCC AGCTCTGTGC TTGGAGGCTG
  R
  GATGGAACCA TCCCTTCCCC TGTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16374791	03.098.385	TWGNF	TWGNF-Mouse-2	f	SNP	G	G	G	A	G	G	A	G		A	G	A	A		G	G	G		G	A	G	A	A	G	G	G	G	G	G	A	A	A	G	G	G	G	A	A	G	G	A	G	A
ss45549401	mCV25061697	ABI	CRAMUS_MOUSE	f	SNP	G		G						A									G
ss46776242	NES10748006	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G								G				G		A		A							G			A										G
ss135512590	ENSMUSSNP1450481	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13477272					SNP	G	G	G	A	G	G	A	G	A	A	G	A	A	G	G	G	G	G	G	A	G	A	A	G	G	G	G	G	G	A	A	A	G	G	G	G	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776242	NES10748006	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95591405 () rs orientation: forward

Symbol	Name	Function Class
Adamtsl4	ADAMTS-like 4	within coordinates
Gm65708	predicted gene, 65708	1382 bp downstream
Rr581015	regulatory region 581015	1002 bp distal
Tssr34517	transcription start site region 34517	430 bp downstream
Tssr34518	transcription start site region 34518	1494 bp downstream