rs13477291 SNP Detail

Summary

• ID
  rs13477291
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100095227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACTCACAG TTAGTTTTGT TGTCACTTTT GTAGCTCTCT
  GCTGATGGAA CTTTTTGTTG CAGACAATGA AGAGGAAGAT GAGGATGAAG GCTTGGGAGT
  R
  GATCTGTCTT TTATTGGCTC TCATGCTTTT GCTCGGATGG AAGGAGATAT TGACAAGCAA
  AGAAAGTTGA TCCTCCAGGG ACAGTTGTCT GAAGCCGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWD/Ph	PWD/PhJ	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss16374814	03.100.482	TWGNF	TWGNF-Mouse-2	f	SNP			A	A	A	A	A	A	G	G	A	G	A		A	A	A	A	A	G	A	G	G	A	G	G	G	G	A	A	A	A	G		A	G	A	G	G
ss45507784	mCV23824962	ABI	CRAMUS_MOUSE	f	SNP		G	A						G									A
ss46800672	NES10745542	PERLEGEN	MM_PANEL2	f	SNP	G			A	A	A		A						G				A		G			G				G		G		A			G					G
ss135538211	ENSMUSSNP5287409	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A															A
ss320848243	CHEV_3_99991834	CHEVERUD	SCREENING_POP	f	SNP																								A												G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWD/Ph	PWD/PhJ	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs13477291					SNP	G	G	A	A	A	A	A	A	G	G	A	G	A	G	A	A	A	A	A	G	A	G	G	A	G	G	G	G	?	A	A	A	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46800672	NES10745542	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100095227 () rs orientation: forward

Symbol	Name	Function Class
Gdap2	ganglioside-induced differentiation-associated-protein 2	within coordinates
Rr64421	regulatory region 64421	1374 bp proximal
Rr69692	regulatory region 69692	1974 bp proximal
Rr82369	regulatory region 82369	1549 bp proximal