rs13477334 SNP Detail

Summary

• ID
  rs13477334
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116696780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATACTG GACAACGATA
  GGATTCAAAT CCTTCAGTCA CTGACTGTCG CAGAAGCAGA GGTGAGATTC TCTTCTCTTG
  CTTATCGACA CAGACATTAG TGACGGTGCT TTTGGCTAAA TCTCAGTTTT TATTTCAGGG
  TCATGTTTTT AAGAAGGTGG TGTTGGCCGT TTACATATGT GGGAATGTGA TTTTTCTCTC
  R
  ATATTCTTAT CTGCAATCAA CCACATATGA GCACAAAAAG ACTTTTATTT TTTATTTTTT
  GTGGGCCTGG GTCATGATGA TCATTAAAAT GAGGAGAGAC CTGAAGCTTG TGCCGACCAC
  CTGCAGCACC TACTAAGTCC GAAGACCCAT GGGCATCGCT ATCGAGGAAC GCTGAAGTCT
  GGGTTTCCCA GCTCACATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PERA/EiJ	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss16374871	03.117.354	TWGNF	TWGNF-Mouse-2	f	SNP							G	G	G		A	G	G	G	G	G	G		G	G	G		G	G	A	G		G	G	G	G	G	G	G
ss45551635	mCV24793227	ABI	CRAMUS_MOUSE	f	SNP		A					G							G
ss60435758	NES15935120	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A				G				G		G		G		G		A		G			G								A
ss135674981	ENSMUSSNP4935637	ENSEMBL	ENSEMBL_Sanger	f	SNP		A												G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PERA/EiJ	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs13477334					SNP	G	A	G	A	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435758	NES15935120	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116696780 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frrs1	ferric-chelate reductase 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			958 bp proximal
Rr583801	regulatory region 583801			989 bp proximal
Rr583802	regulatory region 583802			1230 bp proximal
Tssr31391	transcription start site region 31391			446 bp upstream
Tssr31392	transcription start site region 31392			532 bp upstream
Tssr31393	transcription start site region 31393			566 bp upstream
Tssr31394	transcription start site region 31394			588 bp upstream
Tssr31395	transcription start site region 31395			1233 bp upstream