rs13477541 SNP Detail

Summary

• ID
  rs13477541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6393736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAAC ACATTATTAA ACGGTAAGTG
  R
  ATAGCTCTTC AACTTTATGA TCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16375119	04.005.846	TWGNF	TWGNF-Mouse-2	f	SNP	G	G	G	G	G	G	G	A	A	A	A	A	A	A	G	A	A	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G		G	G	G	G	A	G	G	G	G	G
ss37867611	NES08667668	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G			G							G					A		G								G		G			G				G									G
ss45707493	mCV22885119	ABI	CRAMUS_MOUSE	f	SNP	G	G	G						A											A
ss145961222	ENSMUSSNP1486989	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G																	A
ss321036026	CHEV_4_6320883	CHEVERUD	SCREENING_POP	f	SNP																										G																		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13477541					SNP	G	G	G	G	G	G	G	?	A	A	A	A	A	A	G	A	A	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867611	NES08667668	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6393736 () rs orientation: forward

Symbol	Name	Function Class
Sdcbp	syndecan binding protein	within coordinates
Tssr36396	transcription start site region 36396	565 bp downstream
Tssr36397	transcription start site region 36397	35 bp downstream
Tssr36398	transcription start site region 36398	888 bp upstream
Tssr36399	transcription start site region 36399	996 bp upstream
Tssr36400	transcription start site region 36400	1122 bp upstream
Tssr36401	transcription start site region 36401	1178 bp upstream