rs13477640 SNP Detail

Summary

• ID
  rs13477640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34486267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT TCAACGAGGT GCTGCGGCAG
  Y
  GCAGGATTGC AAATGGTTTA ATGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	JF1/Ms	KK/HlJ	LG/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	PERA/EiJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
ss16375244	04.034.314	TWGNF	TWGNF-Mouse-2	f	SNP				C	T	C	C	C	T	T	C	C	T	T	C	T	T	C	C	C		T	T	T	T	T		T	C	C	C	T	T	T	C	C	C	C
ss37805842	NES09120891	PERLEGEN	MM_PANEL2	r	SNP			A	A	A	G								A							A						A		A									G
ss37951020	NES09460155	PERLEGEN	MM_PANEL2	f	SNP	T				T	C													C				T						C
ss45710438	mCV22883065	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						T										C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	JF1/Ms	KK/HlJ	LG/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	PERA/EiJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ
rs13477640					SNP	T	T	?	?	T	C	C	C	T	T	C	C	T	T	C	T	T	C	C	C	T	T	T	T	T	T	T	T	C	C	C	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805842	NES09120891	PERLEGEN	MM_PANEL	r	SNP	A/G
ss37951020	NES09460155	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34486267 () rs orientation: forward

Symbol	Name	Function Class
Gm12350	predicted gene 12350	within coordinates
Gm33434	predicted gene, 33434	676 bp upstream
Rr590219	regulatory region 590219	389 bp distal
Tssr36763	transcription start site region 36763	501 bp downstream
Tssr36764	transcription start site region 36764	487 bp downstream
Tssr36765	transcription start site region 36765	470 bp downstream