rs13477786 SNP Detail

Summary

• ID
  rs13477786
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:76368745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG TGTGGGTGCG TCCCGGGCGT
  R
  GAGAGCCAGT CCGCTGCGCC CGCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16375423	04.073.805	TWGNF	TWGNF-Mouse-2	f	SNP	G	G	G	A	G	G	A	A	A	A	A	A	A	A	G	A	A	G	G	G	A	A	G	G	A	A	G	A	G	G	G	A	A	A	G	A	A	G	A	G	G	A	A	G	A	A	A	A
ss45719803	mCV25276145	ABI	CRAMUS_MOUSE	f	SNP		G	G						A											G
ss146590116	ENSMUSSNP2188917	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G																	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13477786					SNP	G	G	G	A	G	G	A	A	A	A	A	A	A	A	G	A	A	G	G	G	A	A	G	G	A	A	G	A	G	G	G	A	A	A	G	A	A	G	A	G	G	A	A	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76368745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14391	CpG island 14391	within coordinates
Gm42303	predicted gene, 42303	384 bp upstream
Ptprd	protein tyrosine phosphatase receptor type D	within coordinates
Rr101140	regulatory region 101140	within coordinates
Rr101141	regulatory region 101141	1255 bp proximal
Tssr37647	transcription start site region 37647	376 bp upstream
Tssr37648	transcription start site region 37648	945 bp upstream
Tssr42162	transcription start site region 42162	723 bp upstream
Tssr42163	transcription start site region 42163	12 bp upstream
Tssr42164	transcription start site region 42164	82 bp downstream