rs13477960 SNP Detail

Summary

• ID
  rs13477960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:124502179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGG TGGCCCAGCA GCAGGCTGGG
  R
  GGTGGGAGGG GGAAGGGCTC CTGTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss16375644	04.122.626	TWGNF	TWGNF-Mouse-2	f	SNP			G	G	A	G	G	A	A	A	A	A	G	G	A	A	G	A	A	A	G	G	G	G	G	A	G	G	G	A	G	A	A	G	A	G	A	G	A	G	A
ss45616811	mCV22615924	ABI	CRAMUS_MOUSE	f	SNP	G	G	G						A										A
ss147388893	ENSMUSSNP3436046	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G																A
ss321294262	CHEV_4_124285629	CHEVERUD	SCREENING_POP	f	SNP																								G													A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs13477960					SNP	G	G	G	G	A	G	G	A	A	A	A	A	G	G	A	A	G	A	A	A	G	G	G	G	G	A	G	G	G	A	G	A	A	G	A	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124502179 () rs orientation: forward

Symbol	Name	Function Class
3100002H09Rik	RIKEN cDNA 3100002H09 gene	1545 bp downstream
Gm2164	predicted gene 2164	within coordinates
Gm70190	predicted gene, 70190	1317 bp downstream
Rr599298	regulatory region 599298	1840 bp distal
Rr599299	regulatory region 599299	655 bp distal