rs13478006 SNP Detail

Summary

• ID
  rs13478006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137447706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGC GACGACGACA AGATGGAGAA
  Y
  GGCAGCGGTG GGGGTGGCTT CTTCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16375709	04.135.784	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	T	T	T	C	T	T	C	C	C	C	C	C	T	T	T	C	C	T	T	T	T	T	T	T	C	T	C	C	C	C	C	T	T	T	T	T		C	C	C	T	T	C	T	T	T	T
ss37771376	NES09132175	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C		T							T					T		T			T					C		C			T				T									T
ss45706984	mCV23446173	ABI	CRAMUS_MOUSE	f	SNP		C	T						C											T
ss147617745	ENSMUSSNP3299100	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T																	T
ss321366763	CHEV_4_137276310	CHEVERUD	SCREENING_POP	f	SNP																										C																		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13478006					SNP	C	C	T	T	T	C	T	T	C	C	C	C	C	C	T	T	T	C	C	T	T	T	T	T	T	?	C	T	C	C	C	C	C	T	T	T	T	T	T	C	C	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771376	NES09132175	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137447706 () rs orientation: forward

Symbol	Name	Function Class
Gm52682	predicted gene, 52682	within coordinates
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	706 bp distal
Rr86557	regulatory region 86557	1895 bp proximal
Rr100343	regulatory region 100343	505 bp distal
Tssr39778	transcription start site region 39778	1172 bp downstream
Tssr39779	transcription start site region 39779	1142 bp downstream
Tssr39780	transcription start site region 39780	872 bp downstream
Tssr39781	transcription start site region 39781	670 bp downstream