rs13478269 SNP Detail

Summary

• ID
  rs13478269
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57873193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA CATCGCGTTA CTGCCACTTC
  K
  TCGGCCGCTG AGGCGCTGCG GCGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16376063	05.056.640	TWGNF	TWGNF-Mouse-2	f	SNP	G	G	T	T	T	T	T	T	G	G	G	G	G	T	G	T	T	G	T	T	T	T	T	G	G	T	G	T	G	G	G	T	G	T	T	G	T	G	T	T	G	T	T	G	T	T	G	G
ss45750142	mCV24207272	ABI	CRAMUS_MOUSE	f	SNP		G	T						G											T
ss148495436	ENSMUSSNP5637025	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T																	T
ss321551259	CHEV_5_58107090	CHEVERUD	SCREENING_POP	f	SNP																										T																	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13478269					SNP	G	G	T	T	T	T	T	T	G	G	G	G	G	T	G	T	T	G	T	T	T	T	T	G	G	T	G	T	G	G	G	T	G	T	T	G	T	G	T	T	G	T	T	G	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57873193 () rs orientation: forward

Symbol	Name	Function Class
4932441J04Rik	RIKEN cDNA 4932441J04 gene	within coordinates
Cpgi15874	CpG island 15874	within coordinates
Cpgi15875	CpG island 15875	1001 bp proximal
Gm73136	predicted gene, 73136	within coordinates
Rr611757	regulatory region 611757	1651 bp distal
Rr611758	regulatory region 611758	862 bp distal
Rr611759	regulatory region 611759	796 bp proximal
Rr611760	regulatory region 611760	1766 bp proximal
Tssr46283	transcription start site region 46283	314 bp upstream
Tssr46284	transcription start site region 46284	1074 bp upstream
Tssr46285	transcription start site region 46285	1376 bp upstream
Tssr46286	transcription start site region 46286	1478 bp upstream
Tssr46287	transcription start site region 46287	1629 bp upstream
Tssr46288	transcription start site region 46288	1682 bp upstream
Tssr46289	transcription start site region 46289	1810 bp upstream
Tssr46290	transcription start site region 46290	1894 bp upstream